FAQs Next Generation Sequencing                                            
 

 

FAQs Next Generation Sequencing


starting materials

We recommend starting with total RNA (DNA-free). For detailed sample submission requirements please visit our Sample Submission Guidelines.

To successfully extract RNA for RNA sequencing please follow these guidelines:

  • Use Quality Reagents: Choose high-quality reagents and kits specifically designed for RNA extraction to ensure maximum yield and purity.
  • Tissue or Cell Handling:
    • If using tissue, immediately snap-freeze or store it in RNA preservation solutions (like RNAlater) to prevent RNA degradation.
    • For cell cultures, process samples promptly and keep them on ice until extraction.
  • Homogenization:
    • Homogenize the samples thoroughly to ensure complete lysis of cells and release of RNA.
  • Follow Protocols Carefully: Adhere strictly to the manufacturer's protocol of the RNA extraction kit. Pay close attention to:
    • Sample input amount
    • Lysis buffer volume
    • Centrifugation times and speeds
  • Avoid RNases:
    • Use RNase-free tubes, pipette tips, and reagents. Wear gloves and use sterile equipment to minimize contamination.
  • Check RNA Quality and Quantity:
    • Use a spectrophotometer (e.g., NanoDrop) and a bioanalyzer / Fragment Analyzer to assess RNA purity (A260/A280 ratio) and integrity (RNA Integrity Number, RIN).
  • Storage:
    • Store extracted RNA at -80°C for long-term preservation. For short-term storage, RNA can be kept at -20°C.
  • Prepare for Library Construction:
    • Ensure that the RNA is free of contaminants (like DNA and proteins) and within the required concentration range for downstream applications.